Extract PAM50 genes

extract_PAM50(df, an = NULL)

Arguments

df

expression dataframe, rownames has to be EntrezID (Gene ID)

an

annotation dataframe. Optional, if passed in, those 50 gene info will be extracted.

Value

es.50 dataframe with extracted PAM50 gene symbols as rownames

an.50 (optional) if an is passed in, it will return an.50 dataframe that contains extracted PAM50 gene info