Reference

The heart of PAM50

Main function that creates magics.

PAM50()

PAM50 main function

Plotting functions

These help visualize PAM50 prediction and perform sanity check.

plotValidationGenes()

Plot Validation Genes

plotPAM50()

Visualize PAM50 Prediction

Utilities

These are some utility functions that you may need.

extract_PAM50()

Extract PAM50 genes

getPAM50rank()

Convert expression values to Rank

getPAM50()

PAM50 prediction via PAMR